pruned venvs
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# -*- coding: utf-8 -*-
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"""
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test .agg behavior / note that .apply is tested generally in test_groupby.py
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"""
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import numpy as np
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import pytest
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from pandas.compat import OrderedDict
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import pandas as pd
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from pandas import DataFrame, Index, MultiIndex, Series, concat
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from pandas.core.base import SpecificationError
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from pandas.core.groupby.grouper import Grouping
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import pandas.util.testing as tm
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def test_agg_regression1(tsframe):
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grouped = tsframe.groupby([lambda x: x.year, lambda x: x.month])
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result = grouped.agg(np.mean)
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expected = grouped.mean()
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tm.assert_frame_equal(result, expected)
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def test_agg_must_agg(df):
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grouped = df.groupby('A')['C']
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msg = "Must produce aggregated value"
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with pytest.raises(Exception, match=msg):
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grouped.agg(lambda x: x.describe())
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with pytest.raises(Exception, match=msg):
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grouped.agg(lambda x: x.index[:2])
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def test_agg_ser_multi_key(df):
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# TODO(wesm): unused
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ser = df.C # noqa
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f = lambda x: x.sum()
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results = df.C.groupby([df.A, df.B]).aggregate(f)
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expected = df.groupby(['A', 'B']).sum()['C']
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tm.assert_series_equal(results, expected)
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def test_groupby_aggregation_mixed_dtype():
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# GH 6212
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expected = DataFrame({
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'v1': [5, 5, 7, np.nan, 3, 3, 4, 1],
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'v2': [55, 55, 77, np.nan, 33, 33, 44, 11]},
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index=MultiIndex.from_tuples([(1, 95), (1, 99), (2, 95), (2, 99),
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('big', 'damp'),
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('blue', 'dry'),
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('red', 'red'), ('red', 'wet')],
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names=['by1', 'by2']))
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df = DataFrame({
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'v1': [1, 3, 5, 7, 8, 3, 5, np.nan, 4, 5, 7, 9],
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'v2': [11, 33, 55, 77, 88, 33, 55, np.nan, 44, 55, 77, 99],
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'by1': ["red", "blue", 1, 2, np.nan, "big", 1, 2, "red", 1, np.nan,
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12],
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'by2': ["wet", "dry", 99, 95, np.nan, "damp", 95, 99, "red", 99,
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np.nan, np.nan]
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})
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g = df.groupby(['by1', 'by2'])
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result = g[['v1', 'v2']].mean()
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tm.assert_frame_equal(result, expected)
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def test_agg_apply_corner(ts, tsframe):
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# nothing to group, all NA
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grouped = ts.groupby(ts * np.nan)
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assert ts.dtype == np.float64
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# groupby float64 values results in Float64Index
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exp = Series([], dtype=np.float64,
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index=pd.Index([], dtype=np.float64))
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tm.assert_series_equal(grouped.sum(), exp)
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tm.assert_series_equal(grouped.agg(np.sum), exp)
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tm.assert_series_equal(grouped.apply(np.sum), exp,
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check_index_type=False)
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# DataFrame
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grouped = tsframe.groupby(tsframe['A'] * np.nan)
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exp_df = DataFrame(columns=tsframe.columns, dtype=float,
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index=pd.Index([], dtype=np.float64))
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tm.assert_frame_equal(grouped.sum(), exp_df, check_names=False)
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tm.assert_frame_equal(grouped.agg(np.sum), exp_df, check_names=False)
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tm.assert_frame_equal(grouped.apply(np.sum), exp_df.iloc[:, :0],
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check_names=False)
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def test_agg_grouping_is_list_tuple(ts):
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df = tm.makeTimeDataFrame()
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grouped = df.groupby(lambda x: x.year)
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grouper = grouped.grouper.groupings[0].grouper
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grouped.grouper.groupings[0] = Grouping(ts.index, list(grouper))
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result = grouped.agg(np.mean)
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expected = grouped.mean()
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tm.assert_frame_equal(result, expected)
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grouped.grouper.groupings[0] = Grouping(ts.index, tuple(grouper))
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result = grouped.agg(np.mean)
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expected = grouped.mean()
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tm.assert_frame_equal(result, expected)
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def test_agg_python_multiindex(mframe):
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grouped = mframe.groupby(['A', 'B'])
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result = grouped.agg(np.mean)
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expected = grouped.mean()
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tm.assert_frame_equal(result, expected)
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@pytest.mark.parametrize('groupbyfunc', [
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lambda x: x.weekday(),
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[lambda x: x.month, lambda x: x.weekday()],
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])
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def test_aggregate_str_func(tsframe, groupbyfunc):
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grouped = tsframe.groupby(groupbyfunc)
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# single series
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result = grouped['A'].agg('std')
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expected = grouped['A'].std()
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tm.assert_series_equal(result, expected)
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# group frame by function name
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result = grouped.aggregate('var')
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expected = grouped.var()
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tm.assert_frame_equal(result, expected)
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# group frame by function dict
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result = grouped.agg(OrderedDict([['A', 'var'],
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['B', 'std'],
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['C', 'mean'],
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['D', 'sem']]))
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expected = DataFrame(OrderedDict([['A', grouped['A'].var()],
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['B', grouped['B'].std()],
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['C', grouped['C'].mean()],
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['D', grouped['D'].sem()]]))
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tm.assert_frame_equal(result, expected)
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def test_aggregate_item_by_item(df):
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grouped = df.groupby('A')
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aggfun = lambda ser: ser.size
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result = grouped.agg(aggfun)
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foo = (df.A == 'foo').sum()
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bar = (df.A == 'bar').sum()
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K = len(result.columns)
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# GH5782
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# odd comparisons can result here, so cast to make easy
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exp = pd.Series(np.array([foo] * K), index=list('BCD'),
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dtype=np.float64, name='foo')
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tm.assert_series_equal(result.xs('foo'), exp)
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exp = pd.Series(np.array([bar] * K), index=list('BCD'),
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dtype=np.float64, name='bar')
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tm.assert_almost_equal(result.xs('bar'), exp)
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def aggfun(ser):
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return ser.size
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result = DataFrame().groupby(df.A).agg(aggfun)
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assert isinstance(result, DataFrame)
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assert len(result) == 0
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def test_wrap_agg_out(three_group):
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grouped = three_group.groupby(['A', 'B'])
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def func(ser):
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if ser.dtype == np.object:
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raise TypeError
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else:
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return ser.sum()
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result = grouped.aggregate(func)
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exp_grouped = three_group.loc[:, three_group.columns != 'C']
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expected = exp_grouped.groupby(['A', 'B']).aggregate(func)
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tm.assert_frame_equal(result, expected)
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def test_agg_multiple_functions_maintain_order(df):
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# GH #610
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funcs = [('mean', np.mean), ('max', np.max), ('min', np.min)]
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result = df.groupby('A')['C'].agg(funcs)
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exp_cols = Index(['mean', 'max', 'min'])
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tm.assert_index_equal(result.columns, exp_cols)
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def test_multiple_functions_tuples_and_non_tuples(df):
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# #1359
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funcs = [('foo', 'mean'), 'std']
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ex_funcs = [('foo', 'mean'), ('std', 'std')]
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result = df.groupby('A')['C'].agg(funcs)
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expected = df.groupby('A')['C'].agg(ex_funcs)
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tm.assert_frame_equal(result, expected)
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result = df.groupby('A').agg(funcs)
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expected = df.groupby('A').agg(ex_funcs)
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tm.assert_frame_equal(result, expected)
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def test_agg_multiple_functions_too_many_lambdas(df):
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grouped = df.groupby('A')
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funcs = ['mean', lambda x: x.mean(), lambda x: x.std()]
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msg = 'Function names must be unique, found multiple named <lambda>'
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with pytest.raises(SpecificationError, match=msg):
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grouped.agg(funcs)
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def test_more_flexible_frame_multi_function(df):
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grouped = df.groupby('A')
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exmean = grouped.agg(OrderedDict([['C', np.mean], ['D', np.mean]]))
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exstd = grouped.agg(OrderedDict([['C', np.std], ['D', np.std]]))
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expected = concat([exmean, exstd], keys=['mean', 'std'], axis=1)
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expected = expected.swaplevel(0, 1, axis=1).sort_index(level=0, axis=1)
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d = OrderedDict([['C', [np.mean, np.std]], ['D', [np.mean, np.std]]])
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result = grouped.aggregate(d)
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tm.assert_frame_equal(result, expected)
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# be careful
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result = grouped.aggregate(OrderedDict([['C', np.mean],
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['D', [np.mean, np.std]]]))
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expected = grouped.aggregate(OrderedDict([['C', np.mean],
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['D', [np.mean, np.std]]]))
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tm.assert_frame_equal(result, expected)
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def foo(x):
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return np.mean(x)
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def bar(x):
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return np.std(x, ddof=1)
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# this uses column selection & renaming
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with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
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d = OrderedDict([['C', np.mean],
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['D', OrderedDict([['foo', np.mean],
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['bar', np.std]])]])
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result = grouped.aggregate(d)
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d = OrderedDict([['C', [np.mean]], ['D', [foo, bar]]])
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expected = grouped.aggregate(d)
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tm.assert_frame_equal(result, expected)
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def test_multi_function_flexible_mix(df):
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# GH #1268
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grouped = df.groupby('A')
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# Expected
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d = OrderedDict([['C', OrderedDict([['foo', 'mean'], ['bar', 'std']])],
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['D', {'sum': 'sum'}]])
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# this uses column selection & renaming
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with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
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expected = grouped.aggregate(d)
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# Test 1
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d = OrderedDict([['C', OrderedDict([['foo', 'mean'], ['bar', 'std']])],
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['D', 'sum']])
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# this uses column selection & renaming
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with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
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result = grouped.aggregate(d)
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tm.assert_frame_equal(result, expected)
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# Test 2
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d = OrderedDict([['C', OrderedDict([['foo', 'mean'], ['bar', 'std']])],
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['D', ['sum']]])
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# this uses column selection & renaming
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with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
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result = grouped.aggregate(d)
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tm.assert_frame_equal(result, expected)
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@@ -1,218 +0,0 @@
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# -*- coding: utf-8 -*-
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"""
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test cython .agg behavior
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"""
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from __future__ import print_function
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import numpy as np
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import pytest
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import pandas as pd
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from pandas import (
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DataFrame, Index, NaT, Series, Timedelta, Timestamp, bdate_range)
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from pandas.core.groupby.groupby import DataError
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import pandas.util.testing as tm
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@pytest.mark.parametrize('op_name', [
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'count',
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'sum',
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'std',
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'var',
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'sem',
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'mean',
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pytest.param('median',
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# ignore mean of empty slice
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# and all-NaN
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marks=[pytest.mark.filterwarnings(
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"ignore::RuntimeWarning"
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)]),
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'prod',
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'min',
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'max',
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])
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def test_cythonized_aggers(op_name):
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data = {'A': [0, 0, 0, 0, 1, 1, 1, 1, 1, 1., np.nan, np.nan],
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'B': ['A', 'B'] * 6,
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'C': np.random.randn(12)}
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df = DataFrame(data)
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df.loc[2:10:2, 'C'] = np.nan
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op = lambda x: getattr(x, op_name)()
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# single column
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grouped = df.drop(['B'], axis=1).groupby('A')
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exp = {cat: op(group['C']) for cat, group in grouped}
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exp = DataFrame({'C': exp})
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exp.index.name = 'A'
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result = op(grouped)
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tm.assert_frame_equal(result, exp)
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# multiple columns
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grouped = df.groupby(['A', 'B'])
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expd = {}
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for (cat1, cat2), group in grouped:
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expd.setdefault(cat1, {})[cat2] = op(group['C'])
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exp = DataFrame(expd).T.stack(dropna=False)
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exp.index.names = ['A', 'B']
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exp.name = 'C'
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result = op(grouped)['C']
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if op_name in ['sum', 'prod']:
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tm.assert_series_equal(result, exp)
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def test_cython_agg_boolean():
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frame = DataFrame({'a': np.random.randint(0, 5, 50),
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'b': np.random.randint(0, 2, 50).astype('bool')})
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result = frame.groupby('a')['b'].mean()
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expected = frame.groupby('a')['b'].agg(np.mean)
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tm.assert_series_equal(result, expected)
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def test_cython_agg_nothing_to_agg():
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frame = DataFrame({'a': np.random.randint(0, 5, 50),
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'b': ['foo', 'bar'] * 25})
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msg = "No numeric types to aggregate"
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with pytest.raises(DataError, match=msg):
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frame.groupby('a')['b'].mean()
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frame = DataFrame({'a': np.random.randint(0, 5, 50),
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'b': ['foo', 'bar'] * 25})
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with pytest.raises(DataError, match=msg):
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frame[['b']].groupby(frame['a']).mean()
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def test_cython_agg_nothing_to_agg_with_dates():
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frame = DataFrame({'a': np.random.randint(0, 5, 50),
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'b': ['foo', 'bar'] * 25,
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'dates': pd.date_range('now', periods=50, freq='T')})
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msg = "No numeric types to aggregate"
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with pytest.raises(DataError, match=msg):
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frame.groupby('b').dates.mean()
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def test_cython_agg_frame_columns():
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# #2113
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df = DataFrame({'x': [1, 2, 3], 'y': [3, 4, 5]})
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df.groupby(level=0, axis='columns').mean()
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df.groupby(level=0, axis='columns').mean()
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df.groupby(level=0, axis='columns').mean()
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df.groupby(level=0, axis='columns').mean()
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def test_cython_agg_return_dict():
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# GH 16741
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df = DataFrame(
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{'A': ['foo', 'bar', 'foo', 'bar', 'foo', 'bar', 'foo', 'foo'],
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'B': ['one', 'one', 'two', 'three', 'two', 'two', 'one', 'three'],
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'C': np.random.randn(8),
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'D': np.random.randn(8)})
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ts = df.groupby('A')['B'].agg(lambda x: x.value_counts().to_dict())
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expected = Series([{'two': 1, 'one': 1, 'three': 1},
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{'two': 2, 'one': 2, 'three': 1}],
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index=Index(['bar', 'foo'], name='A'),
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name='B')
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tm.assert_series_equal(ts, expected)
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def test_cython_fail_agg():
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dr = bdate_range('1/1/2000', periods=50)
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ts = Series(['A', 'B', 'C', 'D', 'E'] * 10, index=dr)
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grouped = ts.groupby(lambda x: x.month)
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summed = grouped.sum()
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expected = grouped.agg(np.sum)
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tm.assert_series_equal(summed, expected)
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@pytest.mark.parametrize('op, targop', [
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('mean', np.mean),
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('median', np.median),
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('var', np.var),
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('add', np.sum),
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('prod', np.prod),
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('min', np.min),
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('max', np.max),
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('first', lambda x: x.iloc[0]),
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('last', lambda x: x.iloc[-1]),
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])
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def test__cython_agg_general(op, targop):
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df = DataFrame(np.random.randn(1000))
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labels = np.random.randint(0, 50, size=1000).astype(float)
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result = df.groupby(labels)._cython_agg_general(op)
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expected = df.groupby(labels).agg(targop)
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tm.assert_frame_equal(result, expected)
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@pytest.mark.parametrize('op, targop', [
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('mean', np.mean),
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('median', lambda x: np.median(x) if len(x) > 0 else np.nan),
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||||
('var', lambda x: np.var(x, ddof=1)),
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('min', np.min),
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||||
('max', np.max), ]
|
||||
)
|
||||
def test_cython_agg_empty_buckets(op, targop, observed):
|
||||
df = pd.DataFrame([11, 12, 13])
|
||||
grps = range(0, 55, 5)
|
||||
|
||||
# calling _cython_agg_general directly, instead of via the user API
|
||||
# which sets different values for min_count, so do that here.
|
||||
g = df.groupby(pd.cut(df[0], grps), observed=observed)
|
||||
result = g._cython_agg_general(op)
|
||||
|
||||
g = df.groupby(pd.cut(df[0], grps), observed=observed)
|
||||
expected = g.agg(lambda x: targop(x))
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_cython_agg_empty_buckets_nanops(observed):
|
||||
# GH-18869 can't call nanops on empty groups, so hardcode expected
|
||||
# for these
|
||||
df = pd.DataFrame([11, 12, 13], columns=['a'])
|
||||
grps = range(0, 25, 5)
|
||||
# add / sum
|
||||
result = df.groupby(pd.cut(df['a'], grps),
|
||||
observed=observed)._cython_agg_general('add')
|
||||
intervals = pd.interval_range(0, 20, freq=5)
|
||||
expected = pd.DataFrame(
|
||||
{"a": [0, 0, 36, 0]},
|
||||
index=pd.CategoricalIndex(intervals, name='a', ordered=True))
|
||||
if observed:
|
||||
expected = expected[expected.a != 0]
|
||||
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
# prod
|
||||
result = df.groupby(pd.cut(df['a'], grps),
|
||||
observed=observed)._cython_agg_general('prod')
|
||||
expected = pd.DataFrame(
|
||||
{"a": [1, 1, 1716, 1]},
|
||||
index=pd.CategoricalIndex(intervals, name='a', ordered=True))
|
||||
if observed:
|
||||
expected = expected[expected.a != 1]
|
||||
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
@pytest.mark.parametrize('op', ['first', 'last', 'max', 'min'])
|
||||
@pytest.mark.parametrize('data', [
|
||||
Timestamp('2016-10-14 21:00:44.557'),
|
||||
Timedelta('17088 days 21:00:44.557'), ])
|
||||
def test_cython_with_timestamp_and_nat(op, data):
|
||||
# https://github.com/pandas-dev/pandas/issues/19526
|
||||
df = DataFrame({'a': [0, 1], 'b': [data, NaT]})
|
||||
index = Index([0, 1], name='a')
|
||||
|
||||
# We will group by a and test the cython aggregations
|
||||
expected = DataFrame({'b': [data, NaT]}, index=index)
|
||||
|
||||
result = df.groupby('a').aggregate(op)
|
||||
tm.assert_frame_equal(expected, result)
|
||||
@@ -1,514 +0,0 @@
|
||||
# -*- coding: utf-8 -*-
|
||||
|
||||
"""
|
||||
test all other .agg behavior
|
||||
"""
|
||||
|
||||
from __future__ import print_function
|
||||
|
||||
from collections import OrderedDict
|
||||
import datetime as dt
|
||||
from functools import partial
|
||||
|
||||
import numpy as np
|
||||
import pytest
|
||||
|
||||
import pandas as pd
|
||||
from pandas import (
|
||||
DataFrame, Index, MultiIndex, PeriodIndex, Series, date_range,
|
||||
period_range)
|
||||
from pandas.core.groupby.groupby import SpecificationError
|
||||
import pandas.util.testing as tm
|
||||
|
||||
from pandas.io.formats.printing import pprint_thing
|
||||
|
||||
|
||||
def test_agg_api():
|
||||
# GH 6337
|
||||
# http://stackoverflow.com/questions/21706030/pandas-groupby-agg-function-column-dtype-error
|
||||
# different api for agg when passed custom function with mixed frame
|
||||
|
||||
df = DataFrame({'data1': np.random.randn(5),
|
||||
'data2': np.random.randn(5),
|
||||
'key1': ['a', 'a', 'b', 'b', 'a'],
|
||||
'key2': ['one', 'two', 'one', 'two', 'one']})
|
||||
grouped = df.groupby('key1')
|
||||
|
||||
def peak_to_peak(arr):
|
||||
return arr.max() - arr.min()
|
||||
|
||||
expected = grouped.agg([peak_to_peak])
|
||||
expected.columns = ['data1', 'data2']
|
||||
result = grouped.agg(peak_to_peak)
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_datetimes_mixed():
|
||||
data = [[1, '2012-01-01', 1.0],
|
||||
[2, '2012-01-02', 2.0],
|
||||
[3, None, 3.0]]
|
||||
|
||||
df1 = DataFrame({'key': [x[0] for x in data],
|
||||
'date': [x[1] for x in data],
|
||||
'value': [x[2] for x in data]})
|
||||
|
||||
data = [[row[0],
|
||||
(dt.datetime.strptime(row[1], '%Y-%m-%d').date()
|
||||
if row[1] else None),
|
||||
row[2]]
|
||||
for row in data]
|
||||
|
||||
df2 = DataFrame({'key': [x[0] for x in data],
|
||||
'date': [x[1] for x in data],
|
||||
'value': [x[2] for x in data]})
|
||||
|
||||
df1['weights'] = df1['value'] / df1['value'].sum()
|
||||
gb1 = df1.groupby('date').aggregate(np.sum)
|
||||
|
||||
df2['weights'] = df1['value'] / df1['value'].sum()
|
||||
gb2 = df2.groupby('date').aggregate(np.sum)
|
||||
|
||||
assert (len(gb1) == len(gb2))
|
||||
|
||||
|
||||
def test_agg_period_index():
|
||||
prng = period_range('2012-1-1', freq='M', periods=3)
|
||||
df = DataFrame(np.random.randn(3, 2), index=prng)
|
||||
rs = df.groupby(level=0).sum()
|
||||
assert isinstance(rs.index, PeriodIndex)
|
||||
|
||||
# GH 3579
|
||||
index = period_range(start='1999-01', periods=5, freq='M')
|
||||
s1 = Series(np.random.rand(len(index)), index=index)
|
||||
s2 = Series(np.random.rand(len(index)), index=index)
|
||||
series = [('s1', s1), ('s2', s2)]
|
||||
df = DataFrame.from_dict(OrderedDict(series))
|
||||
grouped = df.groupby(df.index.month)
|
||||
list(grouped)
|
||||
|
||||
|
||||
def test_agg_dict_parameter_cast_result_dtypes():
|
||||
# GH 12821
|
||||
|
||||
df = DataFrame({'class': ['A', 'A', 'B', 'B', 'C', 'C', 'D', 'D'],
|
||||
'time': date_range('1/1/2011', periods=8, freq='H')})
|
||||
df.loc[[0, 1, 2, 5], 'time'] = None
|
||||
|
||||
# test for `first` function
|
||||
exp = df.loc[[0, 3, 4, 6]].set_index('class')
|
||||
grouped = df.groupby('class')
|
||||
tm.assert_frame_equal(grouped.first(), exp)
|
||||
tm.assert_frame_equal(grouped.agg('first'), exp)
|
||||
tm.assert_frame_equal(grouped.agg({'time': 'first'}), exp)
|
||||
tm.assert_series_equal(grouped.time.first(), exp['time'])
|
||||
tm.assert_series_equal(grouped.time.agg('first'), exp['time'])
|
||||
|
||||
# test for `last` function
|
||||
exp = df.loc[[0, 3, 4, 7]].set_index('class')
|
||||
grouped = df.groupby('class')
|
||||
tm.assert_frame_equal(grouped.last(), exp)
|
||||
tm.assert_frame_equal(grouped.agg('last'), exp)
|
||||
tm.assert_frame_equal(grouped.agg({'time': 'last'}), exp)
|
||||
tm.assert_series_equal(grouped.time.last(), exp['time'])
|
||||
tm.assert_series_equal(grouped.time.agg('last'), exp['time'])
|
||||
|
||||
# count
|
||||
exp = pd.Series([2, 2, 2, 2],
|
||||
index=Index(list('ABCD'), name='class'),
|
||||
name='time')
|
||||
tm.assert_series_equal(grouped.time.agg(len), exp)
|
||||
tm.assert_series_equal(grouped.time.size(), exp)
|
||||
|
||||
exp = pd.Series([0, 1, 1, 2],
|
||||
index=Index(list('ABCD'), name='class'),
|
||||
name='time')
|
||||
tm.assert_series_equal(grouped.time.count(), exp)
|
||||
|
||||
|
||||
def test_agg_cast_results_dtypes():
|
||||
# similar to GH12821
|
||||
# xref #11444
|
||||
u = [dt.datetime(2015, x + 1, 1) for x in range(12)]
|
||||
v = list('aaabbbbbbccd')
|
||||
df = pd.DataFrame({'X': v, 'Y': u})
|
||||
|
||||
result = df.groupby('X')['Y'].agg(len)
|
||||
expected = df.groupby('X')['Y'].count()
|
||||
tm.assert_series_equal(result, expected)
|
||||
|
||||
|
||||
def test_aggregate_float64_no_int64():
|
||||
# see gh-11199
|
||||
df = DataFrame({"a": [1, 2, 3, 4, 5],
|
||||
"b": [1, 2, 2, 4, 5],
|
||||
"c": [1, 2, 3, 4, 5]})
|
||||
|
||||
expected = DataFrame({"a": [1, 2.5, 4, 5]}, index=[1, 2, 4, 5])
|
||||
expected.index.name = "b"
|
||||
|
||||
result = df.groupby("b")[["a"]].mean()
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
expected = DataFrame({"a": [1, 2.5, 4, 5], "c": [1, 2.5, 4, 5]},
|
||||
index=[1, 2, 4, 5])
|
||||
expected.index.name = "b"
|
||||
|
||||
result = df.groupby("b")[["a", "c"]].mean()
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_aggregate_api_consistency():
|
||||
# GH 9052
|
||||
# make sure that the aggregates via dict
|
||||
# are consistent
|
||||
df = DataFrame({'A': ['foo', 'bar', 'foo', 'bar',
|
||||
'foo', 'bar', 'foo', 'foo'],
|
||||
'B': ['one', 'one', 'two', 'two',
|
||||
'two', 'two', 'one', 'two'],
|
||||
'C': np.random.randn(8) + 1.0,
|
||||
'D': np.arange(8)})
|
||||
|
||||
grouped = df.groupby(['A', 'B'])
|
||||
c_mean = grouped['C'].mean()
|
||||
c_sum = grouped['C'].sum()
|
||||
d_mean = grouped['D'].mean()
|
||||
d_sum = grouped['D'].sum()
|
||||
|
||||
result = grouped['D'].agg(['sum', 'mean'])
|
||||
expected = pd.concat([d_sum, d_mean], axis=1)
|
||||
expected.columns = ['sum', 'mean']
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
result = grouped.agg([np.sum, np.mean])
|
||||
expected = pd.concat([c_sum, c_mean, d_sum, d_mean], axis=1)
|
||||
expected.columns = MultiIndex.from_product([['C', 'D'],
|
||||
['sum', 'mean']])
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
result = grouped[['D', 'C']].agg([np.sum, np.mean])
|
||||
expected = pd.concat([d_sum, d_mean, c_sum, c_mean], axis=1)
|
||||
expected.columns = MultiIndex.from_product([['D', 'C'],
|
||||
['sum', 'mean']])
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
result = grouped.agg({'C': 'mean', 'D': 'sum'})
|
||||
expected = pd.concat([d_sum, c_mean], axis=1)
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
result = grouped.agg({'C': ['mean', 'sum'],
|
||||
'D': ['mean', 'sum']})
|
||||
expected = pd.concat([c_mean, c_sum, d_mean, d_sum], axis=1)
|
||||
expected.columns = MultiIndex.from_product([['C', 'D'],
|
||||
['mean', 'sum']])
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
result = grouped[['D', 'C']].agg({'r': np.sum,
|
||||
'r2': np.mean})
|
||||
expected = pd.concat([d_sum, c_sum, d_mean, c_mean], axis=1)
|
||||
expected.columns = MultiIndex.from_product([['r', 'r2'],
|
||||
['D', 'C']])
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
|
||||
def test_agg_dict_renaming_deprecation():
|
||||
# 15931
|
||||
df = pd.DataFrame({'A': [1, 1, 1, 2, 2],
|
||||
'B': range(5),
|
||||
'C': range(5)})
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning,
|
||||
check_stacklevel=False) as w:
|
||||
df.groupby('A').agg({'B': {'foo': ['sum', 'max']},
|
||||
'C': {'bar': ['count', 'min']}})
|
||||
assert "using a dict with renaming" in str(w[0].message)
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
df.groupby('A')[['B', 'C']].agg({'ma': 'max'})
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning) as w:
|
||||
df.groupby('A').B.agg({'foo': 'count'})
|
||||
assert "using a dict on a Series for aggregation" in str(w[0].message)
|
||||
|
||||
|
||||
def test_agg_compat():
|
||||
# GH 12334
|
||||
df = DataFrame({'A': ['foo', 'bar', 'foo', 'bar',
|
||||
'foo', 'bar', 'foo', 'foo'],
|
||||
'B': ['one', 'one', 'two', 'two',
|
||||
'two', 'two', 'one', 'two'],
|
||||
'C': np.random.randn(8) + 1.0,
|
||||
'D': np.arange(8)})
|
||||
|
||||
g = df.groupby(['A', 'B'])
|
||||
|
||||
expected = pd.concat([g['D'].sum(), g['D'].std()], axis=1)
|
||||
expected.columns = MultiIndex.from_tuples([('C', 'sum'),
|
||||
('C', 'std')])
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
result = g['D'].agg({'C': ['sum', 'std']})
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
expected = pd.concat([g['D'].sum(), g['D'].std()], axis=1)
|
||||
expected.columns = ['C', 'D']
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
result = g['D'].agg({'C': 'sum', 'D': 'std'})
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
|
||||
def test_agg_nested_dicts():
|
||||
# API change for disallowing these types of nested dicts
|
||||
df = DataFrame({'A': ['foo', 'bar', 'foo', 'bar',
|
||||
'foo', 'bar', 'foo', 'foo'],
|
||||
'B': ['one', 'one', 'two', 'two',
|
||||
'two', 'two', 'one', 'two'],
|
||||
'C': np.random.randn(8) + 1.0,
|
||||
'D': np.arange(8)})
|
||||
|
||||
g = df.groupby(['A', 'B'])
|
||||
|
||||
msg = r'cannot perform renaming for r[1-2] with a nested dictionary'
|
||||
with pytest.raises(SpecificationError, match=msg):
|
||||
g.aggregate({'r1': {'C': ['mean', 'sum']},
|
||||
'r2': {'D': ['mean', 'sum']}})
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
result = g.agg({'C': {'ra': ['mean', 'std']},
|
||||
'D': {'rb': ['mean', 'std']}})
|
||||
expected = pd.concat([g['C'].mean(), g['C'].std(),
|
||||
g['D'].mean(), g['D'].std()],
|
||||
axis=1)
|
||||
expected.columns = pd.MultiIndex.from_tuples(
|
||||
[('ra', 'mean'), ('ra', 'std'),
|
||||
('rb', 'mean'), ('rb', 'std')])
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
# same name as the original column
|
||||
# GH9052
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
expected = g['D'].agg({'result1': np.sum, 'result2': np.mean})
|
||||
expected = expected.rename(columns={'result1': 'D'})
|
||||
|
||||
with tm.assert_produces_warning(FutureWarning, check_stacklevel=False):
|
||||
result = g['D'].agg({'D': np.sum, 'result2': np.mean})
|
||||
tm.assert_frame_equal(result, expected, check_like=True)
|
||||
|
||||
|
||||
def test_agg_item_by_item_raise_typeerror():
|
||||
df = DataFrame(np.random.randint(10, size=(20, 10)))
|
||||
|
||||
def raiseException(df):
|
||||
pprint_thing('----------------------------------------')
|
||||
pprint_thing(df.to_string())
|
||||
raise TypeError('test')
|
||||
|
||||
with pytest.raises(TypeError, match='test'):
|
||||
df.groupby(0).agg(raiseException)
|
||||
|
||||
|
||||
def test_series_agg_multikey():
|
||||
ts = tm.makeTimeSeries()
|
||||
grouped = ts.groupby([lambda x: x.year, lambda x: x.month])
|
||||
|
||||
result = grouped.agg(np.sum)
|
||||
expected = grouped.sum()
|
||||
tm.assert_series_equal(result, expected)
|
||||
|
||||
|
||||
def test_series_agg_multi_pure_python():
|
||||
data = DataFrame(
|
||||
{'A': ['foo', 'foo', 'foo', 'foo', 'bar', 'bar', 'bar', 'bar',
|
||||
'foo', 'foo', 'foo'],
|
||||
'B': ['one', 'one', 'one', 'two', 'one', 'one', 'one', 'two',
|
||||
'two', 'two', 'one'],
|
||||
'C': ['dull', 'dull', 'shiny', 'dull', 'dull', 'shiny', 'shiny',
|
||||
'dull', 'shiny', 'shiny', 'shiny'],
|
||||
'D': np.random.randn(11),
|
||||
'E': np.random.randn(11),
|
||||
'F': np.random.randn(11)})
|
||||
|
||||
def bad(x):
|
||||
assert (len(x.values.base) > 0)
|
||||
return 'foo'
|
||||
|
||||
result = data.groupby(['A', 'B']).agg(bad)
|
||||
expected = data.groupby(['A', 'B']).agg(lambda x: 'foo')
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_consistency():
|
||||
# agg with ([]) and () not consistent
|
||||
# GH 6715
|
||||
def P1(a):
|
||||
try:
|
||||
return np.percentile(a.dropna(), q=1)
|
||||
except Exception:
|
||||
return np.nan
|
||||
|
||||
df = DataFrame({'col1': [1, 2, 3, 4],
|
||||
'col2': [10, 25, 26, 31],
|
||||
'date': [dt.date(2013, 2, 10), dt.date(2013, 2, 10),
|
||||
dt.date(2013, 2, 11), dt.date(2013, 2, 11)]})
|
||||
|
||||
g = df.groupby('date')
|
||||
|
||||
expected = g.agg([P1])
|
||||
expected.columns = expected.columns.levels[0]
|
||||
|
||||
result = g.agg(P1)
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_callables():
|
||||
# GH 7929
|
||||
df = DataFrame({'foo': [1, 2], 'bar': [3, 4]}).astype(np.int64)
|
||||
|
||||
class fn_class(object):
|
||||
|
||||
def __call__(self, x):
|
||||
return sum(x)
|
||||
|
||||
equiv_callables = [sum,
|
||||
np.sum,
|
||||
lambda x: sum(x),
|
||||
lambda x: x.sum(),
|
||||
partial(sum),
|
||||
fn_class(), ]
|
||||
|
||||
expected = df.groupby("foo").agg(sum)
|
||||
for ecall in equiv_callables:
|
||||
result = df.groupby('foo').agg(ecall)
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_over_numpy_arrays():
|
||||
# GH 3788
|
||||
df = pd.DataFrame([[1, np.array([10, 20, 30])],
|
||||
[1, np.array([40, 50, 60])],
|
||||
[2, np.array([20, 30, 40])]],
|
||||
columns=['category', 'arraydata'])
|
||||
result = df.groupby('category').agg(sum)
|
||||
|
||||
expected_data = [[np.array([50, 70, 90])], [np.array([20, 30, 40])]]
|
||||
expected_index = pd.Index([1, 2], name='category')
|
||||
expected_column = ['arraydata']
|
||||
expected = pd.DataFrame(expected_data,
|
||||
index=expected_index,
|
||||
columns=expected_column)
|
||||
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_timezone_round_trip():
|
||||
# GH 15426
|
||||
ts = pd.Timestamp("2016-01-01 12:00:00", tz='US/Pacific')
|
||||
df = pd.DataFrame({'a': 1,
|
||||
'b': [ts + dt.timedelta(minutes=nn)
|
||||
for nn in range(10)]})
|
||||
|
||||
result1 = df.groupby('a')['b'].agg(np.min).iloc[0]
|
||||
result2 = df.groupby('a')['b'].agg(lambda x: np.min(x)).iloc[0]
|
||||
result3 = df.groupby('a')['b'].min().iloc[0]
|
||||
|
||||
assert result1 == ts
|
||||
assert result2 == ts
|
||||
assert result3 == ts
|
||||
|
||||
dates = [pd.Timestamp("2016-01-0%d 12:00:00" % i, tz='US/Pacific')
|
||||
for i in range(1, 5)]
|
||||
df = pd.DataFrame({'A': ['a', 'b'] * 2, 'B': dates})
|
||||
grouped = df.groupby('A')
|
||||
|
||||
ts = df['B'].iloc[0]
|
||||
assert ts == grouped.nth(0)['B'].iloc[0]
|
||||
assert ts == grouped.head(1)['B'].iloc[0]
|
||||
assert ts == grouped.first()['B'].iloc[0]
|
||||
assert ts == grouped.apply(lambda x: x.iloc[0])[0]
|
||||
|
||||
ts = df['B'].iloc[2]
|
||||
assert ts == grouped.last()['B'].iloc[0]
|
||||
assert ts == grouped.apply(lambda x: x.iloc[-1])[0]
|
||||
|
||||
|
||||
def test_sum_uint64_overflow():
|
||||
# see gh-14758
|
||||
# Convert to uint64 and don't overflow
|
||||
df = pd.DataFrame([[1, 2], [3, 4], [5, 6]], dtype=object)
|
||||
df = df + 9223372036854775807
|
||||
|
||||
index = pd.Index([9223372036854775808,
|
||||
9223372036854775810,
|
||||
9223372036854775812],
|
||||
dtype=np.uint64)
|
||||
expected = pd.DataFrame({1: [9223372036854775809,
|
||||
9223372036854775811,
|
||||
9223372036854775813]},
|
||||
index=index)
|
||||
|
||||
expected.index.name = 0
|
||||
result = df.groupby(0).sum()
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
@pytest.mark.parametrize("structure, expected", [
|
||||
(tuple, pd.DataFrame({'C': {(1, 1): (1, 1, 1), (3, 4): (3, 4, 4)}})),
|
||||
(list, pd.DataFrame({'C': {(1, 1): [1, 1, 1], (3, 4): [3, 4, 4]}})),
|
||||
(lambda x: tuple(x), pd.DataFrame({'C': {(1, 1): (1, 1, 1),
|
||||
(3, 4): (3, 4, 4)}})),
|
||||
(lambda x: list(x), pd.DataFrame({'C': {(1, 1): [1, 1, 1],
|
||||
(3, 4): [3, 4, 4]}}))
|
||||
])
|
||||
def test_agg_structs_dataframe(structure, expected):
|
||||
df = pd.DataFrame({'A': [1, 1, 1, 3, 3, 3],
|
||||
'B': [1, 1, 1, 4, 4, 4],
|
||||
'C': [1, 1, 1, 3, 4, 4]})
|
||||
|
||||
result = df.groupby(['A', 'B']).aggregate(structure)
|
||||
expected.index.names = ['A', 'B']
|
||||
tm.assert_frame_equal(result, expected)
|
||||
|
||||
|
||||
@pytest.mark.parametrize("structure, expected", [
|
||||
(tuple, pd.Series([(1, 1, 1), (3, 4, 4)], index=[1, 3], name='C')),
|
||||
(list, pd.Series([[1, 1, 1], [3, 4, 4]], index=[1, 3], name='C')),
|
||||
(lambda x: tuple(x), pd.Series([(1, 1, 1), (3, 4, 4)],
|
||||
index=[1, 3], name='C')),
|
||||
(lambda x: list(x), pd.Series([[1, 1, 1], [3, 4, 4]],
|
||||
index=[1, 3], name='C'))
|
||||
])
|
||||
def test_agg_structs_series(structure, expected):
|
||||
# Issue #18079
|
||||
df = pd.DataFrame({'A': [1, 1, 1, 3, 3, 3],
|
||||
'B': [1, 1, 1, 4, 4, 4],
|
||||
'C': [1, 1, 1, 3, 4, 4]})
|
||||
|
||||
result = df.groupby('A')['C'].aggregate(structure)
|
||||
expected.index.name = 'A'
|
||||
tm.assert_series_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_category_nansum(observed):
|
||||
categories = ['a', 'b', 'c']
|
||||
df = pd.DataFrame({"A": pd.Categorical(['a', 'a', 'b'],
|
||||
categories=categories),
|
||||
'B': [1, 2, 3]})
|
||||
result = df.groupby("A", observed=observed).B.agg(np.nansum)
|
||||
expected = pd.Series([3, 3, 0],
|
||||
index=pd.CategoricalIndex(['a', 'b', 'c'],
|
||||
categories=categories,
|
||||
name='A'),
|
||||
name='B')
|
||||
if observed:
|
||||
expected = expected[expected != 0]
|
||||
tm.assert_series_equal(result, expected)
|
||||
|
||||
|
||||
def test_agg_list_like_func():
|
||||
# GH 18473
|
||||
df = pd.DataFrame({'A': [str(x) for x in range(3)],
|
||||
'B': [str(x) for x in range(3)]})
|
||||
grouped = df.groupby('A', as_index=False, sort=False)
|
||||
result = grouped.agg({'B': lambda x: list(x)})
|
||||
expected = pd.DataFrame({'A': [str(x) for x in range(3)],
|
||||
'B': [[str(x)] for x in range(3)]})
|
||||
tm.assert_frame_equal(result, expected)
|
||||
Reference in New Issue
Block a user